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rs49621690 SNP Detail
Summary
  • ID
    rs49621690
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:35113767 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCCTGCTAG TAGTCAGAGA
    AAAGGAGCTT GGATTAATAA CAGGTACTTG TTGGTCCAAT CCACTCATGG TCTTACCACC
    ATTTGCAGTG GTCCCTCATA AAGGGGAGTG CACCCTTTCT GGCCAAGGTG GAAATGGTTC
    ATTTCAAGCT TGTGATTACA AAAAAGTCTG GTTCAAGCTG TGCTCTAAGA ACATGCATGG
    R
    TTTACTTTCA GGAGCCAGGG CAATTGGATA CAATTCTTTA AAAATTAATA TGGTGTGTGT
    GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGCCACAAG AGGATGTCCT TTGAGATAGG
    GTCTCTTACT GAACACGAAG TCCTCCATTT TGGCACAACT GGCTAGCCAT CAAACTCCTG
    GGTTATGCCT GTGTCCACCT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss60718107 NES16346912 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs49621690 SNP A A A A A A G A A A G A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60718107 NES16346912 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:35113767 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D1Mit243 DNA segment, Chr 1, Massachusetts Institute of Technology 243 15 bp proximal
Gm53547 predicted gene, 53547 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory