rs49622341 SNP Detail

Summary

• ID
  rs49622341
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34934254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AACAAAAAGG GTCGTGCAAA AAAGAAGAAA AGGTAGCACT
  CAGGCACCGC TGGGATTCGA ACCCAGGATC TCCTGTTTAC TAGACAGGCG CTTTAACCAA
  T
  TAAGCCACGG CGCCGCCCGC ACGGCCTGTG CGAGAAACCA GTTCCCATTT CTAGTGACCT
  CATGAGCTTT GCTCATGCGT ACACATTTCC GTGCTAGCAG C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss148805430	ENSMUSSNP5707835	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49622341					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34934254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	within coordinates
Gm38989	predicted gene, 38989	126 bp upstream
Gm73040	predicted gene, 73040	520 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	within coordinates
Rr645337	regulatory region 645337	1444 bp distal
Rr645338	regulatory region 645338	137 bp distal
Rr645339	regulatory region 645339	177 bp distal
Rr645340	regulatory region 645340	within coordinates
Rr645341	regulatory region 645341	531 bp proximal