rs49622771 SNP Detail

Summary

• ID
  rs49622771
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26680377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAACCTGG GCAAAAATAA
  GAAACACTGA CACTTCCTGT CCCATGATGC ACAGGTACCA AGTGAACAAC CCAGATGCCA
  GGAGCTGATG CCCTACTTGG CCATCTTGCT GAGAAAAAAT AGGTTAGCTG TCACTGTGGG
  GTTTACAGAG AAAATGTAGG ACATGGAGAT AAATTTGCAT TTCAGACAAA CCAGTAATAA
  W
  TTTTAGTATA AGTATGTCCC ATATGGTGTT TGAAATATCC ATACCAAAAA GTATTCAGTG
  TTCACCCAAA TTCAAATTTG ACTACATAGC TTATTGTTTT CCTCATTAAA TCCCAGCTGT
  GAGAAATTTC AAAAGTCACC TTTATTGCCA GTCCCACACA TGTATGGTCT ATGGTTTTGG
  TATGGTCGCA TGTAGTTGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134696781	ENSMUSSNP1115424	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49622771					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26680377 () rs orientation: forward

Symbol	Name	Function Class
Gm55656	predicted gene, 55656	within coordinates
Gm65182	predicted gene, 65182	within coordinates