rs49623409 SNP Detail

Summary

• ID
  rs49623409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:34574022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACATACA TATATATACA
  CACACACACT CACACATACA CACACATACA TACATACACA CACATACACA CACACACACA
  CATACACACA CACACTCACA CATACACACA CACATATACA CATACACACA CACACACACA
  CACACACACA CACACAGCTC CATCCATAGT AGCATCAGCC ACATCTACGA AGCAGTATTA
  R
  CAAAGGCCTG TTTTATATCA GGGTTGTCAA AAATGCTCCC AAAGTTCTTT AGGAGGGTGA
  ACTCGGGTCT CTGACTTTTC TTATGCTCAT GATAGATTAA GTGGCAGCAC ACAGCAAATG
  GTTTATTTAC TGTGCAGTCT ATTAGGTCTG AGCATGAAGA TGTTTTGTTA TGAATCGAGT
  TAGGAGGTTC TGTAGACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61376679	NES16749541	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49623409					SNP	G	G	A	G	G	G	A	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61376679	NES16749541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:34574022 () rs orientation: forward

Symbol	Name	Function Class
Kirrel3	kirre like nephrin family adhesion molecule 3	within coordinates
Rr194528	regulatory region 194528	1822 bp distal
Rr203599	regulatory region 203599	1786 bp distal
Rr208757	regulatory region 208757	668 bp proximal