rs49623757 SNP Detail

Summary

• ID
  rs49623757
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:23473152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTATTTTTT TTTAAGAAAA
  CATGTGCATA CGTTTCTATA ACAAAGCTTA ACCTAAATTA CTTCTTATTT GATTGAGCAT
  AAAAGCCTAA AACACTGAGA AAGGACCAAA GCCAAGTGGC CAAGATTTAT CTCTACGACT
  TTGTCCAGTG CTTGCAACAT AACTGACTAC TGTAGGTGAA AGATCCTAAT CCAAGTTGAT
  S
  ACGTGCTTAA ACGTGTGTGT CTATGAACTA GCATATGCAC ACCATGTCAT CATCGTAGAG
  TGGGGAATCC TACTACAAAT ATCCTTATCC TTAGGAAGAC ATTGATCTTT ATGCACTCAG
  TTCTATCTAG TATCTTTCTC AATAAGTCTG GAGATTGTTG GACTCTTCAC ACCCCCCCCC
  CTTAGTCTCT GCATTGTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52537070	NES15597623	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		C	G	G		G
ss324891313	CHEV_15_23402821	CHEVERUD	SCREENING_POP	f	SNP									C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49623757					SNP	G	G	G	G	G	G	G	G	C	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52537070	NES15597623	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23473152 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	within coordinates
Cpgi6966	CpG island 6966	896 bp proximal
Gm56739	predicted gene, 56739	1361 bp upstream
Rr499807	regulatory region 499807	1775 bp distal
Tssr130794	transcription start site region 130794	1388 bp upstream