rs49623857 SNP Detail

Summary

• ID
  rs49623857
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49592562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACATA CACACACACA
  CACACAAACA CACACACACA CACACACACA GAGTTAAAAT GCTTATAACA GTAAGTTTTA
  TGATAGACAA ACAAACTTTA GTGAGAAAAA TCATTCTAAC TTTGAGAAAA CAAAGGATAT
  TCATAAGAGT AGAACTGAAA GACGATAGGA ATCCAATATC AAGGAAAATA GCCAGGCAGA
  K
  AGCAAGAGAT GAAATTATGA AGTTGTGAGT GGACATCATG GGGTCACAGG GCTGGGTGTT
  GACAGAACAC TGAAAAAAAA AAAGATAAAA CAGAGAGACT TGTAAGAAAA GTAACCCGGC
  AGAAAAGGTT TACATAGAAA ATTGACACAA GATATTAAAT TATGATAAAA TGATAAAGTT
  ACATATGGCA GAACATTGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60460800	NES16446398	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T	T	T	T	T	T	T	T	T	T
ss148122785	ENSMUSSNP4363321	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49623857					SNP	G	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60460800	NES16446398	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49592562 () rs orientation: forward

Symbol	Name	Function Class
Gm15518	predicted gene 15518	within coordinates
Gm60046	predicted gene, 60046	1634 bp upstream
Rr404848	regulatory region 404848	1772 bp upstream
Rr516711	regulatory region 516711	1847 bp distal
Rr516712	regulatory region 516712	within coordinates
Rr516713	regulatory region 516713	218 bp proximal
Rr516714	regulatory region 516714	1529 bp proximal
Rr516715	regulatory region 516715	1645 bp proximal
Tssr138713	transcription start site region 138713	1576 bp downstream
Tssr138714	transcription start site region 138714	627 bp upstream
Tssr141329	transcription start site region 141329	1396 bp upstream
Tssr141330	transcription start site region 141330	1382 bp upstream
Tssr141331	transcription start site region 141331	1363 bp upstream
Tssr141332	transcription start site region 141332	1336 bp upstream
Tssr141333	transcription start site region 141333	505 bp upstream
Tssr141334	transcription start site region 141334	351 bp upstream
Tssr141335	transcription start site region 141335	571 bp downstream