rs49623859 SNP Detail

Summary

• ID
  rs49623859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156186780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTG TTAAACTTAT CAGCACCACT
  R
  GGGGGAGTGT TGTTCTTCCC GGGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148070292	ENSMUSSNP4033611	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320578810	CHEV_2_156170596	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49623859					SNP	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156186780 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnbd2	cyclic nucleotide binding domain containing 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr568246	regulatory region 568246			within coordinates
Rr568247	regulatory region 568247			within coordinates