rs49624267 SNP Detail

Summary

• ID
  rs49624267
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116423870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGC ACAATCGTAT CCGGGGATCC
  W
  GCCCCTCATC TGCGCGTGGC CGAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132887388	ENSMUSSNP5716282	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss323865849	CHEV_11_116394358	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49624267					SNP	A	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116423870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4188	CpG island 4188	within coordinates
Sphk1	sphingosine kinase 1	within coordinates
Sphkos	sphingosine kinase 1, opposite strand lncRNA	within coordinates
Tssr3738	transcription start site region 3738	543 bp downstream
Tssr3739	transcription start site region 3739	928 bp downstream
Tssr105960	transcription start site region 105960	1941 bp downstream
Tssr105961	transcription start site region 105961	1202 bp downstream
Tssr105962	transcription start site region 105962	1170 bp downstream
Tssr105963	transcription start site region 105963	1148 bp downstream
Tssr105964	transcription start site region 105964	1030 bp downstream
Tssr105965	transcription start site region 105965	619 bp downstream
Tssr105966	transcription start site region 105966	566 bp downstream
Tssr105967	transcription start site region 105967	483 bp downstream
Tssr105968	transcription start site region 105968	213 bp upstream
Tssr105969	transcription start site region 105969	241 bp upstream
Tssr105970	transcription start site region 105970	918 bp upstream
Tssr105971	transcription start site region 105971	993 bp upstream
Tssr105972	transcription start site region 105972	1014 bp upstream
Tssr111937	transcription start site region 111937	25 bp downstream
Tssr111938	transcription start site region 111938	651 bp downstream