rs49624395 SNP Detail

Summary

• ID
  rs49624395
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:134485411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT GACAGGTCAT CTGAAATCTT
  G
  GCCTTTGGGA ATGAGGTCAG CCTGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145508327	ENSMUSSNP5449627	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss319983165	CHEV_1_136454250	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49624395					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134485411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi772	CpG island 772	613 bp distal
Gm57134	predicted gene, 57134	571 bp upstream
Rr367005	regulatory region 367005	413 bp downstream
Rr418945	regulatory region 418945	582 bp distal
Rr418946	regulatory region 418946	1682 bp distal
Rr418947	regulatory region 418947	1239 bp distal
Rr418948	regulatory region 418948	220 bp distal
Tssr13798	transcription start site region 13798	671 bp upstream