rs49625429 SNP Detail

Summary

• ID
  rs49625429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45569005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACATGAA GAGGATGAAG
  GACAGGCAGC AGAGGATGAG AGACAGCACC ATGAGGGCCT GCACTGCCTT CAGCCAGCCT
  ACAGGGGGCG ACACAGGTGA GGTCACAGCT GGAACCGCTG TTCCCACTGG CTGGACTCTA
  CTCACTGTAG GTTCAGCCAG GCAAGCTTCA GAGATGTCCG TGTTACAAGG ATTACAAGGG
  Y
  TACCAGGGAA ACATCTTACT GATGAGCCCC ATCCCCACAC TCACTGGCGG TCACTTCGAA
  TCCTGAAAGG AGGCAGGCCA CTCCATCTCT TAGAACTCTG GCCTCTCCCT ATTCTCCCTC
  CCACATCACA ACACTCGCTC CATTTCTTTA CAACTCTGAA AAGTCTTCTC AGAATTTAGG
  GAGCTTTCTC CCCTGTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002552	NES16125173	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49625429					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002552	NES16125173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45569005 () rs orientation: forward

Symbol	Name	Function Class
Emp3	epithelial membrane protein 3	Intron
Gm72819	predicted gene, 72819	1042 bp downstream
Rr400324	regulatory region 400324	1609 bp upstream
Rr646607	regulatory region 646607	1593 bp distal
Rr646608	regulatory region 646608	106 bp distal
Rr646609	regulatory region 646609	1260 bp proximal
Tssr66660	transcription start site region 66660	1528 bp downstream
Tssr72489	transcription start site region 72489	222 bp upstream
Tssr72490	transcription start site region 72490	575 bp downstream
Tssr72491	transcription start site region 72491	807 bp downstream
Tssr72492	transcription start site region 72492	1046 bp downstream
Tssr72493	transcription start site region 72493	1070 bp downstream
Tssr72494	transcription start site region 72494	1094 bp downstream
Tssr72495	transcription start site region 72495	1100 bp downstream
Tssr72496	transcription start site region 72496	1119 bp downstream
Tssr72497	transcription start site region 72497	1249 bp downstream
Tssr72498	transcription start site region 72498	1530 bp downstream
Tssr72499	transcription start site region 72499	1680 bp downstream
Tssr72500	transcription start site region 72500	1837 bp downstream