rs49625613 SNP Detail

Summary

• ID
  rs49625613
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45017643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTTTAGA CACAGGGTAG
  GTTCAGGGGT GGGGTGGGGG AGGGCGCGTA AGATGTTCAA TGGTGGGGTT CTGGAGACAA
  CAGTTCAGAA AATCAGGCAC AGGGCTTCTG GAGTTGGGGA GCCAGAGGGT CCCAGGGCCT
  TAGCTACCAT GGCAGGAGTC AAAGGTCAGA AAACCCCTGG TGGAGAGCCA GAGATAAATG
  Y
  TGAAGGCCGC TGTGCTCACT GGCCTGATTT GGGTATCTAA GGTTGGGGAA GGCAGCAGGG
  AGAGGATGGT GACTGGAGGC TCACGTGTAG CTGTGGTGCT GCTGGCGCCG ACGGGCAGAT
  CGCATCTTCT CGAAGCGGGC TTCCATCTCC TCCAGCACCC GAGGAGTGTA GCGCACCACC
  AGTTTCACTG AGCCCTGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003688	NES16117381	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49625613					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003688	NES16117381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45017643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	347 bp distal
Cpgi19050	CpG island 19050	1626 bp proximal
Gm45619	predicted gene 45619	within coordinates
Gm71276	predicted gene, 71276	487 bp downstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	within coordinates
Mtag2	metastasis associated gene 2	271 bp downstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	1200 bp upstream
Rr400310	regulatory region 400310	975 bp downstream
Rr646420	regulatory region 646420	1516 bp distal
Rr646421	regulatory region 646421	928 bp distal
Rr646422	regulatory region 646422	32 bp distal
Tssr72376	transcription start site region 72376	1379 bp upstream