rs49625810 SNP Detail

Summary

• ID
  rs49625810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78355825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACGGCT GCCTTTGCGT
  CGCCTCCGCA GCGACAGCGC GGCGCCCTGC ACCCCGCACT TCGACGTGGT AGTTATCGGA
  GGAGGGCACG CGGGGACCGA GGCGGCCGCC GCCGCCGCTC GCTGTGGCTC GCGGACCCTG
  CTTCTCACGC ACCGCGTGGA CACGATCGGT GAGGAGCCCC GCGGCCGCGG CGGGAACTCT
  R
  CGTCCGACCG AGCGCGGGCA GGGTTGCGGT GGACCGGAGT GGCCGGTGCC CGGGGTCAGG
  GAGCGGAGGA CTGAAAGCCA CGGCGGCTGC TGGGCAGGTC GCTGGGTTGA CCCTCCCCGT
  ATTGTCATCT CAGAGAAATC CCGAGTTAAC ATTTTCACAC CCGTCTTGTT AAGCGACCGA
  CGTGGTGCGT CCACGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss61427215	NES16810961	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs49625810					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427215	NES16810961	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78355825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	within coordinates
Gm17324	predicted gene, 17324	within coordinates
Mto1	mitochondrial tRNA translation optimization 1	within coordinates
Rr401544	regulatory region 401544	206 bp downstream
Rr683554	regulatory region 683554	325 bp distal
Rr683555	regulatory region 683555	233 bp proximal
Tssr86287	transcription start site region 86287	315 bp downstream