rs49625884 SNP Detail

Summary

• ID
  rs49625884
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119907919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGGTGGTT ATATTTGGGT ATATGACTAG AGTTTTAGAT
  ACTGAAGTAA CTGGCTTCAA ATGATCATGT CTGTCAGTAA TGAACAATCA AACTCAAGAG
  R
  TGACATGTTT CTTTGTTCCT TTAAAACTCC TATATGGTTA ACATCAAATG AGTGTTCACT
  ATAATTCTCT CCCAGGGTAA TTCTTTTCCA CAGAAAACT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss61734985	NES17669790	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	A	A	G	G		A	A	A
ss138915055	ENSMUSSNP2393465	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss324207693	CHEV_12_121182657	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs49625884					SNP	A	G	A	G	G	A	A	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61734985	NES17669790	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119907919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5238	CpG island 5238	1682 bp proximal
Rr474318	regulatory region 474318	1286 bp proximal
Tmem196	transmembrane protein 196	1638 bp upstream
Tssr115576	transcription start site region 115576	1920 bp upstream