rs49626947 SNP Detail

Summary

• ID
  rs49626947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57488890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACGATTC CTCCCCTACA
  TAAGGTCTGG CTGGCTAGTC TGGCAGTGTC CTGGCTTCCA AATGGGCTGC TACATTCCTG
  TCCCATCCCA CTGACTCACA CCCTGCCTGC CCAGTGCTCT CTATTCTGAA TCGCATCCAG
  CCTTCAAAAT AGACGTCAGT CTTGACTATC AGTCAAGACC TGTCCTCCAG GCCTCTCTCT
  Y
  CTTGTGCACC TTAGTGTGAA TAACTTCAGG CTGAATGGCC ATGGGTGGCC TTCAAATTAC
  TTCCTATATA ACACGACAGG AGCTGCAGTC AGTCTGAGAG TCCTGTTAAA CCCAGGAGTG
  CTGTGCATGC CTGTAATAAT CCTACTTCTT AGGATAAGAG GATGGTGAGT TTGAGTCTAG
  CCCAGGCTAC ATAGCAAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62409672	NES17244601	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49626947					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62409672	NES17244601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57488890 () rs orientation: forward

Symbol	Name	Function Class
Tssr125867	transcription start site region 125867	1311 bp downstream
Tssr128959	transcription start site region 128959	594 bp downstream