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rs49627293 SNP Detail
Summary
  • ID
    rs49627293
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr12:112641357 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AGTTC CTGCGCAGGG CCCCTCCCTC
    R
    TCCCAGAAGC CCGACTTGAT AGTAA                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss138725609 ENSMUSSNP3694829 ENSEMBL ENSEMBL_Sanger f SNP A G
ss324170085 CHEV_12_113913134 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs49627293 SNP A G G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:112641357 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Akt1 thymoma viral proto-oncogene 1 91 bp upstream
Cpgi5173 CpG island 5173 14 bp distal
Gm30150 predicted gene, 30150 within coordinates
Rr369631 regulatory region 369631 507 bp upstream
Tssr115391 transcription start site region 115391 500 bp downstream
Tssr117877 transcription start site region 117877 896 bp upstream
Tssr117878 transcription start site region 117878 837 bp upstream
Tssr117879 transcription start site region 117879 648 bp upstream
Tssr117880 transcription start site region 117880 556 bp upstream
Tssr117881 transcription start site region 117881 538 bp upstream
Tssr117882 transcription start site region 117882 159 bp upstream
Tssr117883 transcription start site region 117883 109 bp upstream
Tssr117884 transcription start site region 117884 86 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory