rs49628463 SNP Detail

Summary

• ID
  rs49628463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88970283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCCGTGAG AAGGGATCAT
  GAAGCACTTG GTAGCAGCCT GGCTTTTGGT TGGACTCAGC CTCGGGGTGC CCCAGTTCGG
  CAAAGGTGAG GTGGCTGGGC AGGGGTCCCT GGATGAGGGA CGGGCGGGGA GCACCTTTGG
  AAATGCCGCT CAAGGGGCCA CAGTGGGTCC TCAGTGCGTG CACGGCGTGA GGAGCGCTAC
  R
  AAAGAGGCGA TGCTCCCTGG ATACCCTGCC AAAGTGCTAG CAAAGTCCGT GTGGAGTGCC
  CCAGGCTGAG CCTGGGAAGA GGGTGCGATC TAGAAAATAA GAAGATTGAG GGGGTGTGAA
  GGGGTTGTCT TCCTAGGCTT TTTTTTTGCT AGTGATTCCC TGCGCGACCC CTGACTAGCA
  AATATCAATG TTCTTGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61911673	NES17093080	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49628463					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61911673	NES17093080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88970283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	within coordinates
Cpgi5920	CpG island 5920	1474 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	within coordinates
Rr483401	regulatory region 483401	512 bp distal
Rr483402	regulatory region 483402	884 bp distal
Tssr120562	transcription start site region 120562	644 bp downstream
Tssr120563	transcription start site region 120563	584 bp downstream
Tssr120564	transcription start site region 120564	573 bp downstream
Tssr120565	transcription start site region 120565	561 bp downstream
Tssr120566	transcription start site region 120566	541 bp downstream
Tssr120567	transcription start site region 120567	488 bp downstream
Tssr120568	transcription start site region 120568	480 bp downstream
Tssr120569	transcription start site region 120569	445 bp downstream
Tssr120570	transcription start site region 120570	425 bp downstream
Tssr120571	transcription start site region 120571	403 bp downstream
Tssr120572	transcription start site region 120572	250 bp downstream
Tssr120573	transcription start site region 120573	222 bp downstream
Tssr120574	transcription start site region 120574	188 bp downstream
Tssr120575	transcription start site region 120575	1427 bp upstream
Tssr123374	transcription start site region 123374	369 bp upstream