rs49628653 SNP Detail

Summary

• ID
  rs49628653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:18478266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAGTATA CCGCTCTCAT
  GCCAATCATG GTTTTAGAGT TAAAGAAAGA AAATAACATG ATCAAAGTCC ATATAATTAA
  ACAGTTAATA TTAGTGAAAA GGAACATACC AAAGTCTGTC CAACTGAGGC TTTAGGACTT
  AAAAAAAAAT AGCCTCTAGG GAATGACACT GTGAAAACAG CATGCCTGGT TTGGGGATGA
  R
  GAGGCAATGT GATTCTTATT AAACAACTAA ATCATGGTAA CCACAGACTT ATCCTAAGCC
  CAAGGTAAAA GGAAATGGAG TCTTAGTAAG GAACAGTTTA CGATGTAATT TAGGTCTGTA
  AATATAACAG CAAATATATG AGTATAAGAG AATCCAGGAA ATATTCTGTG CATTTGTTAC
  AAATATTATA AGGAGGTACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60375948	NES15879755	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49628653					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60375948	NES15879755	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:18478266 () rs orientation: forward

Symbol	Name	Function Class
Gm30667	predicted gene, 30667	within coordinates
Gm65503	predicted gene, 65503	211 bp downstream
Rr573897	regulatory region 573897	1686 bp distal