rs49629148 SNP Detail

Summary

• ID
  rs49629148
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:8472348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAAGGG CTATTTTAAC
  CACTACCATT ACGAGGGGCC GCCTTGAGTA GTGTTGCTAC CTTTTAACAA ATGAGTTCTC
  CCTCAGCGAA TATGAAACAA AGTATCAAAC GGGACATTTC TTTTTCTGTG CAATTTTTAA
  AGTCTGAGGA CTTTTAAAAA GGTATTTCCG TCTTACACCA ACTTCCATTG CCAAAGCCGC
  S
  AGAAACAAGC TCCCAACATC TAACTTACTC GTGAACTAGA ACTTGGTAAG ATACAGAACT
  GGTATTTTTC TCCAGCATCT ACAGATACAT TTGACCTATT AAAATGACAC CTCGCTCATT
  ACACAGTCAA ACATCATGGT ACAAACAGCC AATGACAATC CTGGGACTCA CTAAGATCTG
  CCCTGACAAG AAAGGATGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss147049409	ENSMUSSNP6853573	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs49629148					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:8472348 () rs orientation: forward

Symbol	Name	Function Class
AW557046	expressed sequence AW557046	within coordinates
Cpgi6933	CpG island 6933	622 bp proximal
Nipbl	NIPBL cohesin loading factor	within coordinates
Rr369900	regulatory region 369900	19 bp upstream
Tssr130591	transcription start site region 130591	741 bp upstream
Tssr130592	transcription start site region 130592	1869 bp upstream
Tssr133664	transcription start site region 133664	1300 bp downstream
Tssr133665	transcription start site region 133665	1354 bp downstream
Tssr133666	transcription start site region 133666	1571 bp downstream
Tssr133667	transcription start site region 133667	1585 bp downstream
Tssr133668	transcription start site region 133668	1745 bp downstream