rs49630044 SNP Detail

Summary

• ID
  rs49630044
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72156397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAA AAGTACAATA AATTCAACTT
  C
  CAAGATCCCT GTAGTCTATA GCAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145153482	ENSMUSSNP2611939	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322705528	CHEV_8_74227652	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49630044					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72156397 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	1964 bp upstream
Cpgi20570	CpG island 20570	1917 bp distal
Gm18860	predicted gene, 18860	452 bp downstream
Rr665157	regulatory region 665157	1975 bp distal
Rr665158	regulatory region 665158	1474 bp distal
Rr665159	regulatory region 665159	1761 bp distal
Rr665160	regulatory region 665160	1543 bp distal
Rr665161	regulatory region 665161	453 bp distal
Rr665162	regulatory region 665162	27 bp distal
Tssr81749	transcription start site region 81749	1999 bp upstream
Tssr81750	transcription start site region 81750	1969 bp upstream
Tssr81751	transcription start site region 81751	1912 bp upstream
Tssr81752	transcription start site region 81752	1119 bp upstream