rs49630258 SNP Detail

Summary

• ID
  rs49630258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47261077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTATTGT CATCAATGAA CTCGGTCCTT CCCATCACTT
  ATCTCTGGTC AAGTATTTCT CTTACCTCCA GGCCATCACT GTTTTGATAC CATTCTCATC
  Y
  GTTCCTTTAT AAGTACCGAA TCCTCTGTCC ATCATAACAG GCCTGCCATC TTGAAGACGA
  GACTGTAGTT GAGACATTAA GCAAAAATAC ATAGATTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148985296	ENSMUSSNP3933242	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss324335507	CHEV_13_47202969	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49630258					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47261077 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	741 bp distal
Dek	DEK proto-oncogene	1400 bp upstream
Rr479039	regulatory region 479039	1165 bp distal
Rr479040	regulatory region 479040	543 bp distal
Rr479041	regulatory region 479041	1148 bp proximal
Tssr119627	transcription start site region 119627	1190 bp downstream
Tssr119628	transcription start site region 119628	1171 bp downstream
Tssr122371	transcription start site region 122371	1979 bp upstream
Tssr122372	transcription start site region 122372	1899 bp upstream
Tssr122373	transcription start site region 122373	1854 bp upstream
Tssr122374	transcription start site region 122374	1726 bp upstream
Tssr122375	transcription start site region 122375	1491 bp upstream
Tssr122376	transcription start site region 122376	1473 bp upstream
Tssr122377	transcription start site region 122377	1430 bp upstream
Tssr122378	transcription start site region 122378	1395 bp upstream
Tssr122379	transcription start site region 122379	1380 bp upstream
Tssr122380	transcription start site region 122380	1368 bp upstream