rs49630287 SNP Detail

Summary

• ID
  rs49630287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45314068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCACCAA GGGAGTACCC
  TCAAAACAGC TGTGGCTCCA GCCACTGCCC AGAATGGTTC AGGAGGCTAG TCAGCTGCCT
  CAAATCCAGA ACCAACAGAG ACTAGGTCCC CATTGCATCT GGAACAGTTT CCTGCCTGGT
  CTCAGGGGGG CCTCTGGACT ACAGAATGGG CCCAGGGGCA AGAGATATCA GGGTGGGACC
  Y
  ACTGGGTGGG AGGGTGAAGA ATCCCTTGAG TGAAGACTGG GGACCCACAC CTGCCTCTAC
  GCATCTCCTC CAGCAGCCAG CCAGAAGCCC AAGGAAGTGG GGAGGGGGTG GCTCTGGTCC
  TGCCAGCTTC TACCCTGACC CTTTTGGGAA GTCTCTTAGA GAGCACGGTG CAGACCACTG
  GCTCTAAGGT CCCCTAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136411201	ENSMUSSNP3445476	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49630287					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45314068 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	668 bp distal
Rr200381	regulatory region 200381	868 bp distal
Rr209195	regulatory region 209195	1933 bp proximal
Tssr84783	transcription start site region 84783	196 bp downstream
Tssr84784	transcription start site region 84784	144 bp downstream
Tssr84785	transcription start site region 84785	372 bp upstream
Tssr84786	transcription start site region 84786	404 bp upstream
Tssr84787	transcription start site region 84787	426 bp upstream
Tssr84788	transcription start site region 84788	457 bp upstream
Tssr84789	transcription start site region 84789	483 bp upstream