rs49631006 SNP Detail

Summary

• ID
  rs49631006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88864345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT GATCTGGTCA GGGACAGAGG
  R
  CACACTGAAC TCCCTGAGGC CCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss132548884	ENSMUSSNP4755202	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323783386	CHEV_11_88834833	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49631006					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88864345 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	517 bp downstream
Coil	coilin	416 bp upstream
Cpgi3523	CpG island 3523	227 bp proximal
Gm10367	predicted gene 10367	within coordinates
Rr237596	regulatory region 237596	1945 bp distal
Rr247482	regulatory region 247482	within coordinates
Tssr104059	transcription start site region 104059	400 bp upstream
Tssr104060	transcription start site region 104060	409 bp upstream