rs49631862 SNP Detail

Summary

• ID
  rs49631862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16859378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA TGGCTCAGTG GTTAAGAGCA
  Y
  TGACTGTTCT TCCAGAGAAC CCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137195988	ENSMUSSNP6699040	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss323920166	CHEV_12_16816183	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49631862					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16859378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4441	CpG island 4441	1217 bp proximal
E2f6	E2F transcription factor 6	1554 bp upstream
Rr463369	regulatory region 463369	960 bp distal
Rr463370	regulatory region 463370	1114 bp proximal
Rr463371	regulatory region 463371	1611 bp proximal
Tssr112858	transcription start site region 112858	1563 bp upstream
Tssr112859	transcription start site region 112859	1602 bp upstream