rs49633800 SNP Detail

Summary

• ID
  rs49633800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78747046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG CCTGGTCTAC AGAGTGAGTT
  Y
  CAGGACAGCC AGGGCTATAC AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148189364	ENSMUSSNP3546236	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325025775	CHEV_15_78693276	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49633800					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78747046 () rs orientation: forward

Symbol	Name	Function Class
Gm26634	predicted gene, 26634	110 bp downstream
Gm63169	predicted gene, 63169	1302 bp upstream
Rr505427	regulatory region 505427	836 bp proximal