rs49634558 SNP Detail

Summary

• ID
  rs49634558
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:69661793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACATAAAG AGCTTCATAA
  AATACTGTTC TAACAGAAGT GTGCTTGAAG GTTCGCTAAC ATTTTCTATT CACTATCAAA
  ACCCCAAAGA CTCCCACTGA AATGTGGCCC CCCCAACCAA CAGGTCAGGC CTTTCTCCTT
  CCTGAGGTGA GTAGGCTCTG GGGCAATGTT TTCTAAATGG ATCAAGACCT CTGCTACGGG
  K
  TGAGTTAGAC CCAGATAAGC CTCTGAATCT TAAGACTTCT CGGTCCCCAG AACTGAGAGC
  TAACGAAGCT TCTACAGTTT ACAGTTCAGC CAACCCGGGG TCCTGTTCTA TGGCAGCAGG
  AGACCAAGGC AGTTCCCATC CATTTTCTGT CTGACACCCA ACATTTCTGT GCTTAAGAAA
  TTAAATGCTG AACTGAACTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss52650325	NES15460570	PERLEGEN	MM_PANEL2	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs49634558					SNP	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52650325	NES15460570	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69661793 () rs orientation: forward

Symbol	Name	Function Class
Gm48676	predicted gene, 48676	326 bp upstream
Rr482156	regulatory region 482156	1466 bp proximal
Tent4a	terminal nucleotidyltransferase 4A	Intron