rs49635032 SNP Detail

Summary

• ID
  rs49635032
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112426756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCACCACAG GAAGGGGGCT TACTGTAGTT CCCCCACCAC
  CACCTCCTCT CCTCCCTGTA CGTTTTGTTC CACTGATGGC AATCAGCAGA AGTGAGAGCT
  S
  TGCTTAGAAT CAAGCTGCTT GTGCTGGTTA GAGAAGAGTG TTGCCAAGCC GCAGAATCAC
  AGAGAAACAC GGTGGTCATT TGGGAGACTA ATCTGAGGGA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52696954	NES15533541	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49635032					SNP	C	C	C	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696954	NES15533541	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112426756 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Gm55074	predicted gene, 55074	899 bp upstream
Rr486330	regulatory region 486330	1392 bp distal
Rr486331	regulatory region 486331	590 bp distal
Tssr121099	transcription start site region 121099	1715 bp downstream
Tssr121100	transcription start site region 121100	1674 bp downstream
Tssr121101	transcription start site region 121101	1628 bp downstream
Tssr121102	transcription start site region 121102	1416 bp downstream
Tssr124046	transcription start site region 124046	1070 bp upstream