rs49635205 SNP Detail

Summary

• ID
  rs49635205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16193191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTTTGT AAAGTGACTA
  ACTACTTTTT GCCAAGGAAT ACAATCTTGA CAATGGGCTC TCAGACCCTA TGCTGAACGA
  CTCAATCCTT AAGAGGAAAA ACTTTCATGG ATTCTAATCA TTGGCTCAGG ACCACACTAA
  CCTGTTGCTG TGGAGAAAAA TACCTGTCCA AAGCCCAGGC TCGAAACTGA GAACTCCTCT
  Y
  CAGTCATGAG GATACAGATC TTACTGCCAA TCTGTGGGGA CCGGGCACAC AGATGTTCTA
  AAACCTCTTT ACTTTCATGT TAAATGCCAG GCTAAGGAAT AGGATCCCTT GCCAAAGCCA
  TTTGAAAGGA ATGCCATTGT TTTGTTTGGT GGAGCATATG GGCTAGTGAA GTGTGTGCAG
  GGACTCCCAG CATTTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620142	NES15517401	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49635205					SNP	C	C	T	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620142	NES15517401	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16193191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	809 bp distal
Inhba	inhibin beta-A	within coordinates
Tssr118436	transcription start site region 118436	1900 bp downstream
Tssr118437	transcription start site region 118437	1664 bp downstream
Tssr118438	transcription start site region 118438	1550 bp downstream
Tssr118439	transcription start site region 118439	1502 bp downstream
Tssr118440	transcription start site region 118440	1308 bp downstream
Tssr118441	transcription start site region 118441	1193 bp downstream
Tssr118442	transcription start site region 118442	973 bp downstream
Tssr118443	transcription start site region 118443	489 bp downstream
Tssr118444	transcription start site region 118444	428 bp downstream
Tssr118445	transcription start site region 118445	1313 bp upstream