rs49635692 SNP Detail

Summary

• ID
  rs49635692
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185319003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTTTGG TTTGTGTTTT
  CTGTCTATGG TATCCTGTTC TGCTGGTTGT TACTGGTTTG CACTGTTTTG AGTCATGGGG
  TACTTGACTT TCAAGTTTGC TTTTTCTTCA AAGGTTATCT CATCCTCTTA TTCATTTGTA
  TCACCACATG CAATGGAGAA TGAACGGTTT TTACAAAGCA GCCTTCTGGA ATTTTGATGG
  M
  CATTGTGCCA GTTCCACCGA GCACTTTGCA GAGAAAGGAA TAGTGAGATT TCTGAACATA
  TGGACATGGG GACATGTTGT GGTATGCCAG AGGAATTTGT GGGGAAATTA GATAATTCTG
  GGACAGGCTG CAAAGTGTGG TTATCCTACC CCATGTCCCC TTGTCACTAT GTGATGGCAC
  CTCACTGATG ACATAGTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146436973	ENSMUSSNP491663	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320177556	CHEV_1_187410685	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs49635692					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185319003 () rs orientation: forward

Symbol	Name	Function Class
Rr425414	regulatory region 425414	1417 bp distal
Rr425415	regulatory region 425415	840 bp proximal