rs49636074 SNP Detail

Summary

• ID
  rs49636074
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:132618667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG ATTTCTGAGT TCGAGGCCAG
  C
  CTGGTCTACA AAGTGAGTTC CAGGA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145938508	ENSMUSSNP4996044	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49636074					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:132618667 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctbp2	C-terminal binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr656751	regulatory region 656751			1200 bp distal
Tssr75241	transcription start site region 75241			1609 bp upstream
Tssr75242	transcription start site region 75242			1456 bp upstream
Tssr75243	transcription start site region 75243			1419 bp upstream