rs49636433 SNP Detail

Summary

• ID
  rs49636433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57387574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGGTTCA GGAGTGCTGG
  GGAAGGGACA GGGCATAAAG GAAAGGATTT TCAAGATCTA AGAAGGTGGA GTGTGTGTGT
  GTGTGTACAT GTGTTGAGGG GCGCTCATGG GAACTAGAAG AGCCCTTCCC TGGCAGGTTG
  GAGAGACAGT GGGGTTTAGG AGTTAAAGGT GAAGCAAATA GAAGCAACCT GGGCTTGGCC
  Y
  TCATGGTGAA GATGCTCATG GGGTCCTAGG GAATGAGGCA ACTAGGTGCA GGGGTGTGAT
  GCTTAGGGTC AAAGCTTTGC TGGTGGGCCC CAGGGACAGA GTGATGGCAG GAGACTTAAG
  CCACCTCCTC TTCAGCCTCC TCTTCGAACT CGCCCTCTTC AGCAGTGGCA TCCTGGTACT
  GCTGGTACTC GGACACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62807951	NES17358183	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49636433					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62807951	NES17358183	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57387574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9393	CpG island 9393	515 bp proximal
Gm56907	predicted gene, 56907	within coordinates
Rr529266	regulatory region 529266	1983 bp distal
Rr529267	regulatory region 529267	1377 bp distal
Rr529268	regulatory region 529268	291 bp distal
Tssr5182	transcription start site region 5182	330 bp downstream
Tssr145371	transcription start site region 145371	1965 bp downstream
Tssr145372	transcription start site region 145372	289 bp downstream
Tssr145373	transcription start site region 145373	20 bp upstream
Tssr145374	transcription start site region 145374	114 bp upstream
Tssr148882	transcription start site region 148882	159 bp upstream
Tssr148883	transcription start site region 148883	66 bp upstream
Tssr148884	transcription start site region 148884	within coordinates
Tssr148885	transcription start site region 148885	33 bp downstream
Tssr148886	transcription start site region 148886	60 bp downstream
Tssr148887	transcription start site region 148887	84 bp downstream
Tssr148888	transcription start site region 148888	111 bp downstream
Tssr148889	transcription start site region 148889	148 bp downstream
Tssr148890	transcription start site region 148890	244 bp downstream
Tssr148891	transcription start site region 148891	362 bp downstream
Tssr148892	transcription start site region 148892	382 bp downstream
Tssr148893	transcription start site region 148893	596 bp downstream
Tssr148894	transcription start site region 148894	668 bp downstream
Tssr148895	transcription start site region 148895	1072 bp downstream
Tssr148896	transcription start site region 148896	1134 bp downstream
Tubb4a	tubulin, beta 4A class IVA	within coordinates