rs49636526 SNP Detail

Summary

• ID
  rs49636526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45093325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGGCCAA GTGGTGCTGA
  CTGGTGCTTC AGTGCTTTCT AGAAGTGTAG GAAATCTGGG AGTCTACCAC TTTAAGAACC
  TCAGGAAACT CCGGGTTTCA TAACTGAGAC AGCCTGCTGC ATCTGGTCCA GCTGACGCTG
  CAGTGGGCTG GACTGCAGTG GGGGAGGGGA TGGCTGCAGG GGAAGTAGAG GACAGCAGGT
  R
  CTGGGCATGC TGTCCTTGGA AATGAGGTGA CAGGTGTCCC TTTTCTAGAC AGTGCTGGGA
  GTTCTCCTCC TCTGGAGGGA AGAGAGCAGG ACCTTTACAA AGAAGGGTCA GAGGGACAGA
  GGTCATATGG ATTCATTCTG GCTGCCCAGA ACATCTACTG TACAAAACCT TGAGGCTGCT
  TTAGGGATCT ATGGGGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388767	NES16766273	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	A	G	A	A	G	A
ss136406339	ENSMUSSNP5464982	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49636526					SNP	G	G	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388767	NES16766273	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45093325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			425 bp upstream
Rr677858	regulatory region 677858			within coordinates
Rr677859	regulatory region 677859			437 bp proximal
Smim35	small integral membrane protein 35			Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant