rs49636991 SNP Detail

Summary

• ID
  rs49636991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:96859890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAA TGTTCATGCT ACTATAGATT
  Y
  GATAGTTGTA AGAAAGACTA TATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145435496	ENSMUSSNP5810374	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T		T
ss322339865	CHEV_7_104359193	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49636991					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:96859890 () rs orientation: forward

Symbol	Name	Function Class
Gab2	growth factor receptor bound protein 2-associated protein 2	within coordinates
Tssr67956	transcription start site region 67956	460 bp downstream
Tssr67957	transcription start site region 67957	356 bp downstream
Tssr67958	transcription start site region 67958	742 bp upstream
Tssr67959	transcription start site region 67959	819 bp upstream
Tssr73570	transcription start site region 73570	635 bp upstream
Tssr73571	transcription start site region 73571	477 bp downstream
Tssr73572	transcription start site region 73572	556 bp downstream