rs49637788 SNP Detail

Summary

• ID
  rs49637788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52201997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGGCAA GCTTAACCTC
  TCCCACCTCT CTTTTCCTCT CTCTTTCCCT CTCTTCCCCT CTCTCTCCAA CTGTCTTCCT
  TTCCCAGCTT CCTTGCAACT GTCCCCACTC TTTATTTGAC CTTCCCGGAA GGCCGTGGGA
  ACTCCACGGA AGGCAGGATG CCCCAGGGCC TTTGATCACA TCTCCACTTT ATTTGAATAA
  R
  TCTGGCAAAG GGACCCAAAG CCCGCATCCT CATCTTGGGC AGGATTTCCG CCGCCACCTT
  CCAAAAGCAA GAAATGGAGG GAATCTGAGG TCTCCCCAAA CTTCCCGGGT CAGATTGCCC
  GACTGACGTT GCTGCCACAG TTTGTGAACA ATCTAGCTGC ACAAAAGACT TCTCTGCGCT
  GCTTTCGAAG AACCGCCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886891	NES15970087	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49637788					SNP	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886891	NES15970087	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52201997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17430	CpG island 17430	510 bp distal
Cpgi17431	CpG island 17431	113 bp proximal
Gm57855	predicted gene, 57855	within coordinates
Hoxa9	homeobox A9	within coordinates
Rr146300	regulatory region 146300	within coordinates
Tssr61006	transcription start site region 61006	406 bp upstream
Tssr61007	transcription start site region 61007	199 bp downstream
Tssr61008	transcription start site region 61008	220 bp downstream
Tssr61009	transcription start site region 61009	805 bp downstream
Tssr61010	transcription start site region 61010	928 bp downstream
Tssr61011	transcription start site region 61011	1128 bp downstream
Tssr61012	transcription start site region 61012	1148 bp downstream