rs49638229 SNP Detail

Summary

• ID
  rs49638229
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24006970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATA ATGCAACTGA TTTTGATCAT
  G
  TGTTTGCCCA CTTATGTATA GGTCT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145332781	ENSMUSSNP5827775	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss325327358	CHEV_17_23924963	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49638229					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24006970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	1676 bp distal
Flywch2	FLYWCH family member 2	1915 bp upstream
Tssr146663	transcription start site region 146663	1913 bp upstream
Tssr146664	transcription start site region 146664	1874 bp upstream
Tssr146665	transcription start site region 146665	1759 bp upstream
Tssr146666	transcription start site region 146666	1884 bp downstream