rs49638350 SNP Detail

Summary

• ID
  rs49638350
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85416922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA GAGGGGGGGG ACTTTGCAAA
  G
  GTCACCTTAC GGTTTTCTGG GTTTA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145392120	ENSMUSSNP6682275	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss322751355	CHEV_8_87214192	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49638350					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85416922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20706	CpG island 20706	244 bp distal
Rr666576	regulatory region 666576	819 bp distal
Rr666577	regulatory region 666577	1050 bp distal
Rr666578	regulatory region 666578	480 bp distal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	990 bp downstream
Tssr78431	transcription start site region 78431	975 bp downstream