rs49638484 SNP Detail

Summary

• ID
  rs49638484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60056743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATATGGG GGACTTTTGG
  TATAGCATTG GAAATGTAAA TGAGCTAAAT ACCTAATAAA AAATGGAAAA AAAAAAAGAA
  AACTCAGGAA GAATTTCTGA AATATGAAAG GGTGAGTTGA GGAGGAAGAA ATAGAATTTT
  CATGTCCGTA ATAAGAGATG AGCAAAGTCT ATAGAAATAT ACTGAGTGAC AAATAACTAG
  R
  GCCAAAGATA TTCCTTTCAC TGAAAAAAAT AGAGGATCAA AGCACTACTG CCATTGGAGA
  GAAATTCTTT AGCCACTCAT CAGTCAACCT GTCCTCCATG ATTAATTCTT ATTCTCCTTA
  ATCTTTGATG AGCAGTCATG TACCTACAGT ATCTTTTCAA CTACAGAGGT GTGGGAATCT
  CAACTCTTAC ATTGCTATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52560020	NES15632547	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49638484					SNP	G	A	A	A	A	A	G	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52560020	NES15632547	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60056743 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1923 bp upstream
Tssr134460	transcription start site region 134460	1992 bp downstream