rs49638897 SNP Detail

Summary

• ID
  rs49638897
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134296823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAATTAC TATTTAGGGA
  CAATGGCTAT CAGAAATGAC CATTCAAATA CAACAAAATA TTAAGCTAAT TATTTTAAGG
  TGTAATTTTT ACTCTCAAAC CAACTTTTTA AAAAAAGTCA AACAAACTGA AGCCAGGTGT
  GGTGGCCCAA GCCGGTAATC GCAGCCAGCA TCTGAGAGAC AGATGTCACG CTTGAGGCCA
  S
  TCTGGGCTTC CACAGAGAAG AAAACTAGGT GTCGGGGCAC ACACCTGTGA TCCCAGCACA
  GACACAGATG GAAAGTTCAA GGCCAGCCTG GGCCACATTA GACACAGATG GAAAGTTCAA
  GGCCAGCCTG GGCCACATTA GACACTGTCT CATTTTTTAA AAAAGAAAAA GGAAACAGAG
  GGAGGCTGGG CAGTGGCTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60846262	NES16011260	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49638897					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60846262	NES16011260	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134296823 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	within coordinates
Gtf2i	general transcription factor II I	within coordinates
Rr621980	regulatory region 621980	1406 bp proximal
Tssr53620	transcription start site region 53620	1891 bp upstream
Tssr53621	transcription start site region 53621	1351 bp upstream
Tssr53622	transcription start site region 53622	1248 bp downstream