rs49639165 SNP Detail

Summary

• ID
  rs49639165
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:86807063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCACATA CCTCGTCTCT
  CCACTGCAAC ATCCACTCCC ACCACCCTTG ACTGTGACAT CCTACACCAC CTTGCATTGT
  GACTTCCCAT AGCTTGTCAC CCCCCAACCC CGACTGTGGC AGTAAGCTTC TCCTCCCTCT
  ACTTTGCCAT CGAATCCACA CTTTTCCACA TAGGACATCC ATTCCTCTTC TCTCCGCTGT
  K
  ACACCCAACT TCTACTGTGA GACCCAACCT TCCCTCTCCA CACACATACC CTCCCCTCCT
  CTCTCTATGG CAACAATCTT GCCTCCTGTT TACACTCTAA GATCCAGATA CCACAAGCAA
  CTTGCCTTTC CCCATGTTCT GTAGACTTCT CCACCAGGGG TATCTGGCCC TTTTCTGTCT
  CACACATGTC TCACTTTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52575646	NES15650187	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49639165					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52575646	NES15650187	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:86807063 () rs orientation: forward

Symbol	Name	Function Class
Gm49466	predicted gene, 49466	775 bp downstream
Rr315010	regulatory region 315010	1063 bp distal