rs49639201 SNP Detail

Summary

• ID
  rs49639201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32187945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGACAACCTC AAACTGAAAC CACTTGTATG CGGGTTGTAG
  ATTATACACT TGGAACTTCA GGGCTAGTAG CATCACACCG AATTTGGCGC ATTTGTTGAT
  Y
  TGCCTGCCTT GCCTGCCCTA CCGATTCAGA ACCACACAGT CCCAGCAACC GCATTGCCAC
  TAGGCAGTAT CTAGTTTAGC ACTGAAGCCC ATCTAGTGAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss63246546	NES17481719	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49639201					SNP	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63246546	NES17481719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32187945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10757	CpG island 10757	111 bp proximal
Gm50210	predicted gene, 50210	1272 bp upstream
Sgms1	sphingomyelin synthase 1	within coordinates
Tssr158859	transcription start site region 158859	401 bp upstream
Tssr158860	transcription start site region 158860	424 bp downstream
Tssr158861	transcription start site region 158861	471 bp downstream