rs49639759 SNP Detail

Summary

• ID
  rs49639759
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:106743161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCGCCAAGA TCGTCAATGC AAACCCTCAA CACCAAGGAG
  GGCCAAAGAA TGAATAAAAT CACCCAAACT GAACATCAAG CTTGCATGTG GATCACAGTG
  S
  TAATTTTATT TCCACATAAA TTCTGTCCGT AGAAAAGACA GAATTTCATG TAGTCTCATG
  TGTGTTTCTA ACTCCTGCCC TGCCCAAGTC AAATACACC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61212622	NES16721083	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	G	G	G	G	C	G	C		G	C	C	G		C
ss321634743	CHEV_5_107024314	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49639759					SNP	C	G	C	G	G	G	G	C	G	C	G	G	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61212622	NES16721083	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:106743161 () rs orientation: forward

Symbol	Name	Function Class
Gm28039	predicted gene, 28039	within coordinates
Rr616368	regulatory region 616368	696 bp distal