rs49640274 SNP Detail

Summary

• ID
  rs49640274
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47122035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTTTTTC TGTCCTTTCA
  GTAGTGATTG CCGCTTGGGA ATGCGGGTGT GAAGGGTCCG AGCTGCCGCC CAGCGGGGAG
  GAGACCCCAG GACGCCGGAA ATCACCATCC TGAAGCTACG AGAAAAGGGG AAGGAGCGAT
  CTTCATTCAG TTTTGTGCCT TGCGAGGGAT TTACATTTTT AATCGCTATT TTTTTTTTTT
  W
  AAATATCTCC GCGCTACTGT CTGTCATCGT CTCTGGAGAA TCAACCAGAA CCACCAGAAC
  GTAACTGAAC CGATAGAGAG AGGAGAGCAA GGCAGGAGCA GAGTCAGTAC CTGCAGCGCC
  CGGGCACCGG AGACCTTGGA ACCAGAACGT GTCTCGGGAG GCCACGGGGC TGCGGCTCCG
  CCAAACTTTG GGGCGGGCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139393603	ENSMUSSNP1669630	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49640274					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47122035 () rs orientation: forward

Symbol	Name	Function Class
2810457G06Rik	RIKEN cDNA 2810457G06 gene	within coordinates
Cpgi6376	CpG island 6376	within coordinates
Gm34934	predicted gene, 34934	1860 bp upstream
Rr297079	regulatory region 297079	within coordinates
Samd4	sterile alpha motif domain containing 4	within coordinates
Tssr4382	transcription start site region 4382	528 bp downstream
Tssr125240	transcription start site region 125240	1642 bp downstream
Tssr125241	transcription start site region 125241	1605 bp downstream
Tssr125242	transcription start site region 125242	1579 bp downstream
Tssr125243	transcription start site region 125243	within coordinates
Tssr128301	transcription start site region 128301	409 bp downstream