rs49640724 SNP Detail

Summary

• ID
  rs49640724
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25757290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTAGATG ACAGGAGGCA
  GCAGGACCCC AGGCATGGGG ATGTTCTAAA TGAGAGGTCA TTTATCTTAA CATGAATGAG
  TCAATAAGTA ACAAAGACAC TTAGCCATGG TTAAGAGCAA GACAAAGAAA ATCAAATTAT
  GATAAGGTAG AAGGAAAAAA CTATACAAGG AAAAATGCAT GAGCTAGAAA ACAGACGTCG
  M
  GGCACAGATG GAAAGGAAGC TAAGACTCTT CCGCTGGACG GCCAACCAGT GGGCAAGCAA
  GGGAAAGAAG ACCTCCTTAC AGAATCAGTT CTCTACATTT TCCTGCACAC TCTGTTACTA
  GTTCTAATAT ATGACACATT TCTAGACCGT TTGTTATGTC AATACTTTCC AGTGTATTTG
  CCTCATTTGA AGGAAATAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52193858	NES15225002	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49640724					SNP	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193858	NES15225002	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25757290 () rs orientation: forward

Symbol	Name	Function Class
Gm66740	predicted gene, 66740	within coordinates
Rr218979	regulatory region 218979	1511 bp proximal
Rr218980	regulatory region 218980	1911 bp proximal