rs49640900 SNP Detail

Summary

• ID
  rs49640900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:110427043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCACAAA GTTAAGTGAA
  AATTGTGTAG TTTGTATGAA TGGCTGTTTT CTTAGCGAAC CTTTTGGGGT AAGATATTGG
  AATTCATTTA AAAGGCTCAA ATCTGTGACT TTTTACTACT TATACATTTT ATTAATATGT
  TCTGTCATGT ATACAGATTA CATAACTGAA TATTTATGGC CTAATAACAT ATAAACATCC
  K
  CAGCAACTTC TCCACAAAGT AATAGATTTC TACTCACCAT CTAAATAATC ACTGTACTTA
  TGTTCCTATA CTATTTTGTA TTGTATGTTC ACATAGTATA TTAACACGTA ATAAATTTAA
  TGTTTCATAC ATACTTAATA TGTTAATATA TAACAGGAAT CATTTTATAA AATACTTGCA
  TTACATAATG CAGTAAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132792093	ENSMUSSNP3113988	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss323847537	CHEV_11_110397531	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49640900					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:110427043 () rs orientation: forward

Symbol	Name	Function Class
Gm11682	predicted gene 11682	within coordinates
Gm74395	predicted gene, 74395	within coordinates
Rr459043	regulatory region 459043	1355 bp proximal
Rr459044	regulatory region 459044	1489 bp proximal
Tssr105717	transcription start site region 105717	277 bp downstream