rs49641780 SNP Detail

Summary

• ID
  rs49641780
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37298681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCACTAGA ACCCTGCTGC TTGTCTCAGG
  CGAGCCTCAG GGCAACACCT CGCCCTCACT CAGACATCAG CTCCATCCCT TCCTGTACTT
  GGATACTGTC CTTGGCAATG CCAGCTTCAG CAAGAAGCTG AGGGAGATAG AGGCCATGAT
  S
  GCAGTCCAAG AGGAAAAGAT CTTCAGACTC AGAAGAATCA TAAAATGATG AGGAGTCTCT
  AAGCCAAGAT GCTACACAAG GCACTCCATA GACACACGCA CAAGCACTAT Agcatccata
  gatcttgcac ctggagagcc aatcaaccag                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148937662	ENSMUSSNP5400322	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
ss319691075	CHEV_1_37316445	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49641780					SNP	C	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37298681 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Cpgi160	CpG island 160	1678 bp proximal
Gm69908	predicted gene, 69908	757 bp downstream
Rr409496	regulatory region 409496	946 bp distal