rs49642230 SNP Detail

Summary

• ID
  rs49642230
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81008229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACAAAA ATGAGGTCGA
  AGTATCTAGC AGAACAAAAG GAATAATTGA GAGGGGTGAG AAAAGGGAGG GAGAGGAAGG
  GATATGCCTA AGGTACTATA TCTGTATGAA AATTTTAAGA AATCAAAAAG AAAGAAGAGG
  TGAGTGGAGA AATGAAGGGT AATTATACAG GACAAAAGAA AAAAAAAACC TTAAGAGAAT
  C
  GTGGATCTAT TTATTATTGC TCTGATGGTT TCACAGCTAT GTCCATGTGT CACACTTAGC
  AAGTCAGATA ATATATTTAT ATTTTTTGGT ATCCCAAAGT GGAAATTCTC CAATCTCACC
  CTCCAGGGTG CTGGGATTAA GTCATGTATG AGCCCCATAT TTGGTTATAC CATATCATTT
  ACATAGAAGT TACTGGAGGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss146075175	ENSMUSSNP393922	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49642230					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81008229 () rs orientation: forward

Symbol	Name	Function Class
Gm66613	predicted gene, 66613	within coordinates
Map4k3	mitogen-activated protein kinase kinase kinase kinase 3	within coordinates
Rr343206	regulatory region 343206	972 bp proximal
Tssr149503	transcription start site region 149503	21 bp upstream
Tssr149504	transcription start site region 149504	1207 bp downstream