rs49642666 SNP Detail

Summary

• ID
  rs49642666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG CTGCCTCCCA AGCCAGCCCT
  R
  CAGTCTGATG AACATTCTAG AGTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52723013	NES15567943	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G		A	G	G	G		G
ss139574354	ENSMUSSNP5501369	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss324641233	CHEV_14_55587630	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49642666					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723013	NES15567943	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206250 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	1866 bp upstream
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1891 bp downstream
Rr407057	regulatory region 407057	1010 bp distal
Rr492379	regulatory region 492379	1662 bp distal
Rr492380	regulatory region 492380	within coordinates
Rr492381	regulatory region 492381	868 bp proximal
Tssr125718	transcription start site region 125718	110 bp downstream
Tssr125719	transcription start site region 125719	18 bp downstream
Tssr125720	transcription start site region 125720	within coordinates
Tssr125721	transcription start site region 125721	8 bp upstream
Tssr125722	transcription start site region 125722	433 bp upstream
Tssr125723	transcription start site region 125723	502 bp upstream
Tssr125724	transcription start site region 125724	514 bp upstream
Tssr125725	transcription start site region 125725	1374 bp upstream
Tssr125726	transcription start site region 125726	1399 bp upstream
Tssr125727	transcription start site region 125727	1432 bp upstream
Tssr128744	transcription start site region 128744	1856 bp upstream
Tssr128745	transcription start site region 128745	1571 bp upstream
Tssr128746	transcription start site region 128746	818 bp upstream
Tssr128747	transcription start site region 128747	794 bp upstream
Tssr128748	transcription start site region 128748	750 bp upstream
Tssr128749	transcription start site region 128749	719 bp upstream
Tssr128750	transcription start site region 128750	697 bp upstream
Tssr128751	transcription start site region 128751	691 bp upstream
Tssr128752	transcription start site region 128752	632 bp upstream
Tssr128753	transcription start site region 128753	433 bp upstream
Tssr128754	transcription start site region 128754	363 bp upstream
Tssr128755	transcription start site region 128755	1922 bp downstream
Tssr128756	transcription start site region 128756	1939 bp downstream