rs49642975 SNP Detail

Summary

• ID
  rs49642975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128065428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAGACA AAGAGAGGTC
  CACACATGCT GTGTAGAGAG CAGGAAAGCT AGTCACCAAC AAACCAAAGG ATGCAGGTGA
  CAGAATGTTC TCAGGCTGGG AAAACCATGG AGAAATTATT AGGTGGCTAT GAGACCCATG
  GGTGGATCAA ATTCTAGAGT CACCTACCTG TTACTACTGT TAGTGCTTAA GGATACTGGC
  R
  TTCCAAGGGG TGTTTCTGAT ACCCACAGCT GGATCCCTCC AGCAGGGTGG TTAGTATTCA
  GGAGGTCTTG TAAGCATGAA GCTGGGGCCT CTAGCTGTCC CAGGCTGCAG TTCATACCCC
  ATTGCATTTA GGAGACGCCC TTCAGCTAAA AGGGTTATCC CAGCAGTGTG ATGTGGAGAG
  TCGGGACAGA GTGAGAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61060892	NES16065789	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	A	A	G	G	A	G	G	A
ss145891512	ENSMUSSNP1910546	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49642975					SNP	G	G	A	A	A	G	A	A	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060892	NES16065789	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128065428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	1466 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	1767 bp downstream
Rr656042	regulatory region 656042	1615 bp distal
Rr656043	regulatory region 656043	843 bp distal
Rr656044	regulatory region 656044	1357 bp distal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1	1987 bp upstream
Tssr69425	transcription start site region 69425	1730 bp downstream