rs49643453 SNP Detail

Summary

• ID
  rs49643453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9467008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACAGGG CCTGCTACAC
  GGGACAATAC ATAAGTGAAG GCAGTGTCAC CCTACAGGCT GCAGTCAGAT AATCTGACCC
  TCCTCGTCTA CCCCATCCTG CTGCCTTACC ACAGGCCAGG AGGCAGTGGG GCCCAGGCTG
  AACCCTCTGA AATCATGCTA CAAAGGAAAT CTCTTGGGCT CTAAGTAGCT TTTCTCAGTC
  R
  TTTGTCACAG CAGTGGGTGT CTAACTAAAC GGCCCCGCTC CTTTCACTGT CCTTCTGGAC
  CCTTGGACCG GTCAGTTCTT TATGATCTCA TTACAAATGC CCGACATCTC AGGGAAGACA
  GGAGAGCAAG GCCTCCTCAG AGCACAGAGG GGTTGACACG GGTCCAGAAC TTTTATACTG
  CAAGTCTCTG GTGGCTCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60369242	NES15871136	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49643453					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369242	NES15871136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9467008 () rs orientation: forward

Symbol	Name	Function Class
C030034L19Rik	RIKEN cDNA C030034L19 gene	1072 bp upstream
Gm55345	predicted gene, 55345	227 bp upstream
Rr69254	regulatory region 69254	1208 bp distal
Rr82079	regulatory region 82079	within coordinates
Rr374488	regulatory region 374488	1885 bp downstream
Tssr28343	transcription start site region 28343	1046 bp upstream
Tssr28344	transcription start site region 28344	1101 bp upstream
Tssr28345	transcription start site region 28345	1163 bp upstream