rs49643748 SNP Detail

Summary

• ID
  rs49643748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119170150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA GCCCTAACTA CCCAACTTAC
  Y
  CTCTGTGTCC TGTCTCTATC CATCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147329774	ENSMUSSNP4061585	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss320474911	CHEV_2_119165405	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49643748					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119170150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12118	CpG island 12118	1119 bp distal
Rr397227	regulatory region 397227	1342 bp downstream
Rr563488	regulatory region 563488	1143 bp distal
Rr563489	regulatory region 563489	1982 bp distal
Rr563490	regulatory region 563490	1489 bp distal