rs49644157 SNP Detail

Summary

• ID
  rs49644157
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82959203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA TCATAAATAA TCTGAAACTG
  A
  ACTGGAGAGA TGGCTCAGGG GTTAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132466426	ENSMUSSNP4962470	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49644157					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82959203 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	117 bp distal
Gm20234	predicted gene, 20234	390 bp upstream
Slfn2	schlafen 2	within coordinates
Tssr103640	transcription start site region 103640	1943 bp downstream
Tssr103641	transcription start site region 103641	1841 bp downstream
Tssr103642	transcription start site region 103642	21 bp upstream
Tssr103643	transcription start site region 103643	901 bp upstream
Tssr103644	transcription start site region 103644	950 bp upstream
Tssr103645	transcription start site region 103645	1131 bp upstream
Tssr103646	transcription start site region 103646	1200 bp upstream
Tssr103647	transcription start site region 103647	1369 bp upstream
Tssr103648	transcription start site region 103648	1439 bp upstream
Tssr103649	transcription start site region 103649	1484 bp upstream
Tssr109639	transcription start site region 109639	1554 bp upstream
Tssr109640	transcription start site region 109640	1086 bp upstream